BUGSnet is a powerful R project package for Bayesian network meta-analysis. The package is based on JAGS and enables high-quality Bayesian network meta-analysis according to recognized reporting guidelines (PRISMA, ISPOR-AMPC-NCA and NICE-DSU). In this paper, we introduced the procedure of the BUGSnet package for Bayesian network meta-analysis through an example of network meta-analysis of steroid adjuvant treatment of pemphigus with continuous or dichotomous data.
The R software bmeta package is a package that implements Bayesian meta-analysis and meta-regression by invoking JAGS software. The program is based on the Markov Chain Monte Carlo (MCMC) algorithm to combine various effect quantities (OR, MD and IRR) of different types of data (dichotomies, continuities and counts). The package has the advantages of fewer command function parameters, rich models, powerful drawing function, easy of understanding and mastering. In this paper, an example is presented to demonstrate the complete operation flow of bmeta package to implement bayesian meta-analysis and meta-regression.
This study introduced the construction of individualized risk assessment model based on Bayesian networks, comparing with traditional regression-based logistic models using practical examples. It evaluates the model's performance and demonstrates its implementation in the R software, serving as a valuable reference for researchers seeking to understand and utilize Bayesian network models.
The WinBUGS software can be called from either R (provided R2WinBUGS as an R package) or Stata software for network meta-analysis. Unlike R, Stata software needs to create relevant ADO scripts at first which simplify operation process greatly. Similar with R, Stata software also needs to load another package when drawing network plots. This article briefly introduces how to implement network meta-analysis using Stata software by calling WinBUGS software.
The choice of genetic models was main difficulty in the meta-analysis of gene-disease association studies. In this study, we made a further discussion about the genetic model-free approach that proposed by Minelli et al. The program that coded by JAGS and R was carried out to perform the Bayesian procedure. In a real example, several kinds of prior distribution were used, including non-informative prior distribution and external clinical prior information. Especially, compared to Minelli’s study, we introduced clinical prior information. The results indicated that the pooled results were rather robust no matters the prior distribution were non-informative or informative, especially when the number of included studies were large.
NetMetaXL is a macro command to conduct network meta-analysis in the frame of Microsoft Excel on basis of Bayesian theory. This macro command, which was officially launched in 2014, integrates data extraction and entry, analysis results output and graph plotting as a whole. Currently, this version contains enough optional models, and all operations are through menu and easy to conduct; however, it is appropriate only for the network meta-analysis based on dichotomous variables, which still has fairly a lot to be enhanced and improved. This article gives a brief introduction based on examples to implement network meta-analysis using NetMetaXL.
ObjectiveA simulation study was used to generate the multivariate normal distribution data with a residual effect based on series of N-of-1 trials. The statistical performance of paired t-test, mixed effect model and Bayesian mixed effect model were compared.MethodsThree-cycles N-of-1 trials were set, and the participants were randomly assigned to 2 different treatments in each cycle. The simulation study included the following procedures: producing six-dimensional normal distribution data, randomly allocating intervention methods and patients, adding residual effects, constructing and evaluating 3 models, and setting the parameters. The sample sizes were set as 3, 5, 8 and 10, and the correlation coefficients among different times were set as 0.0, 0.5 and 0.8. Different proportions of residual effects for the 2 groups were set. Type I error, power, mean error (ME), and mean square error (MSE) were used to compare the 3 models.ResultsWhen there was no residual effect in the 2 groups, type I errors of 3 models were approximately 0.05, and their MEs were approximately 0. Paired t-test had the highest power and the lowest MSE. When the residual effect existed in the 2 groups, the type I error of paired t-test increased, and its estimated value deviated from the true value (ME≠0). Type I errors of the mixed effect model and Bayesian mixed-effect model were approximately 0.05, and they had the same power. The estimated values of the two models were close to the true value (ME was approximately 0).ConclusionsWhen there is no residual effect (0% vs. 0%), paired t-test is suitable for data analysis of N-of-1 trials. When there is a residual effect, the mixed effect model and Bayesian mixed-effect model are suitable for data analysis of N-of-1 trials.
Systematic reviews and meta-analyses have become the cornerstone methodologies for integrating multi-source research data and enhancing the quality of evidence. Traditional meta-analyses often demonstrate limitations when handling multiple treatment options. Network meta-analysis (NMA) overcomes these limitations by constructing a network of evidence that encompasses various treatment options, allowing for the simultaneous comparison of both direct and indirect evidence across multiple treatment plans. This provides more comprehensive and precise support for clinical decision-making. This article comprehensively reviews the statistical principles of NMA, its three fundamental assumptions, and the statistical inference framework. It also critically analyzes the mainstream NMA software and packages currently available, such as R (including gemtc, netmeta, rjags, pcnetmeta), Stata (mvmeta, network), WinBUGS, SAS, ADDIS, and various online applications, highlighting their strengths, weaknesses, and suitable scenarios. This analysis provides researchers with a scientific and unified framework for conducting clinical studies and policy-making.
The key for performing meta-analysis using WinBUGS software is to construct a model of Bayesian statistics. The hand-written code model and Doodle model are two major methods for constructing it. The approach of hand-written code is flexible and convenient, but the language programming is fallibility. The Doodle is complicated, but it is benefit to understand the structure of hand-written code model and prevent error. This article briefly describes how to construct the Doodle model for binary and continuous data of head to head meta-analysis, indirect comparison and network meta-analysis, and ordinal variables meta-analysis.
Bayesian N-of-1 trials is increasingly popular in recent years. This study introduced the principle, statistical requirements, application status, advantages and disadvantages of Bayesian N-of-1 trials. Although the application of Bayesian N-of-1 trials is still limited in small scale and some problems remain to be solved, but it can provide more posterior information, and it can be the most important type of N-of 1 trial in future.